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44 lines
992 B
44 lines
992 B
2 years ago
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from neuron import h
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import numpy as np
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from ..util import random_seed, custom_init
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class Protocol(object):
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"""
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Base class providing common tools for running, analyzing, and displaying
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simulations.
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"""
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def __init__(self):
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self.reset()
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def reset(self):
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self._vectors = {}
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def run(self, seed=None):
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"""
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Run this protocol.
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Subclasses should extend this method.
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"""
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if seed is not None:
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random_seed.set_seed(seed)
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self.reset()
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def __setitem__(self, name, variable):
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"""
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Record *variable* during the next run.
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"""
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vec = h.Vector()
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self._vectors[name] = vec
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vec.record(variable)
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def __getitem__(self, name):
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"""
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Return a np array for previously recorded data given *name*.
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"""
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return np.array(self._vectors[name])
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def custom_init(self, vinit=-60.0):
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return custom_init(vinit)
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