import scipy.stats import numpy as np from .population import Population from .. import cells class TStellate(Population): type = "tstellate" def __init__(self, species="mouse", **kwds): # Note that `cf` is the mean value used when selecting SGCs to connect; # it is NOT the measured CF of the cell (although it should be close). freqs = self._get_cf_array(species) fields = [("cf", float), ("input_sr", list)] super(TStellate, self).__init__(species, len(freqs), fields=fields, **kwds) self._cells["cf"] = freqs self._cells["input_sr"] = [np.tile([1.0, 1.0, 1.0], len(freqs))] def create_cell(self, cell_rec): """ Return a single new cell to be used in this population. The *cell_rec* argument is the row from self.cells that describes the cell to be created. """ return cells.TStellate.create(species=self.species, **self._cell_args) def connection_stats(self, pop, cell_rec): """ The population *pop* is being connected to the cell described in *cell_rec*. Return the number of presynaptic cells that should be connected and a dictionary of distributions used to select cells from *pop*. """ size, dist = Population.connection_stats(self, pop, cell_rec) from .. import populations if isinstance(pop, populations.SGC): # Select SGC inputs from a all SR groups sr_vals = pop.cells["sr"] # print('SRs for TS: ', np.bincount(sr_vals)/sr_vals.shape[0], np.unique(sr_vals)) dist["sr"] = (sr_vals < 3).astype(float) return size, dist