import scipy.stats import numpy as np from .population import Population from .. import cells class Bushy(Population): """Population of bushy cells. Cells are distributed uniformly from 2kHz to 64kHz. Note that `cf` is the mean value used when selecting SGCs to connect; it is NOT the measured CF of the cell (although it should be close). """ type = "bushy" def __init__(self, species="mouse", **kwds): freqs = self._get_cf_array(species) fields = [ ("cf", float), ("input_sr", list), # distribution probability of SGC SR groups ("sr", int), ] super(Bushy, self).__init__(species, len(freqs), fields=fields, **kwds) self._cells["cf"] = freqs self._cells["input_sr"] = [np.tile([1.0, 1.0, 1.0], len(freqs))] def create_cell(self, cell_rec): """ Return a single new cell to be used in this population. The *cell_rec* argument is the row from self.cells that describes the cell to be created. """ return cells.Bushy.create(species=self.species, **self._cell_args) def connection_stats(self, pop, cell_rec): """ The population *pop* is being connected to the cell described in *cell_rec*. Return the number of presynaptic cells that should be connected and a dictionary of distributions used to select cells from *pop*. """ size, dist = Population.connection_stats(self, pop, cell_rec) from .. import populations if isinstance(pop, populations.SGC): # only select SGC inputs from a single SR group # (this relationship is hypothesized based on reconstructions of # endbulbs) sr_vals = pop.cells["sr"] u = np.random.choice(sr_vals) # assign input sr for this cell # print('u: ', u) # pick from one sr group for all inputs, with prob same as distribution in nerve dist["sr"] = (sr_vals == u).astype(float) self._cells["sr"] = u return size, dist