model of DCN pyramidal neuron
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# -*- coding: utf-8 -*-
import numpy as np
from pyqtgraph.Qt import QtGui, QtCore
from pyqtgraph.python2_3 import asUnicode, basestring
import pyqtgraph.metaarray as metaarray
__all__ = ["TableWidget"]
def _defersort(fn):
def defersort(self, *args, **kwds):
# may be called recursively; only the first call needs to block sorting
setSorting = False
if self._sorting is None:
self._sorting = self.isSortingEnabled()
setSorting = True
self.setSortingEnabled(False)
try:
return fn(self, *args, **kwds)
finally:
if setSorting:
self.setSortingEnabled(self._sorting)
self._sorting = None
return defersort
class TableWidget(QtGui.QTableWidget):
"""Extends QTableWidget with some useful functions for automatic data handling
and copy / export context menu. Can automatically format and display a variety
of data types (see :func:`setData() <pyqtgraph.TableWidget.setData>` for more
information.
"""
def __init__(self, *args, **kwds):
"""
All positional arguments are passed to QTableWidget.__init__().
===================== =================================================
**Keyword Arguments**
editable (bool) If True, cells in the table can be edited
by the user. Default is False.
sortable (bool) If True, the table may be soted by
clicking on column headers. Note that this also
causes rows to appear initially shuffled until
a sort column is selected. Default is True.
*(added in version 0.9.9)*
===================== =================================================
"""
QtGui.QTableWidget.__init__(self, *args)
self.itemClass = TableWidgetItem
self.setVerticalScrollMode(self.ScrollPerPixel)
self.setSelectionMode(QtGui.QAbstractItemView.ContiguousSelection)
self.setSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Preferred)
self.clear()
kwds.setdefault("sortable", True)
kwds.setdefault("editable", False)
self.setEditable(kwds.pop("editable"))
self.setSortingEnabled(kwds.pop("sortable"))
if len(kwds) > 0:
raise TypeError("Invalid keyword arguments '%s'" % kwds.keys())
self._sorting = None # used when temporarily disabling sorting
self._formats = {
None: None
} # stores per-column formats and entire table format
self.sortModes = {} # stores per-column sort mode
self.itemChanged.connect(self.handleItemChanged)
self.contextMenu = QtGui.QMenu()
self.contextMenu.addAction("Copy Selection").triggered.connect(self.copySel)
self.contextMenu.addAction("Copy All").triggered.connect(self.copyAll)
self.contextMenu.addAction("Save Selection").triggered.connect(self.saveSel)
self.contextMenu.addAction("Save All").triggered.connect(self.saveAll)
def clear(self):
"""Clear all contents from the table."""
QtGui.QTableWidget.clear(self)
self.verticalHeadersSet = False
self.horizontalHeadersSet = False
self.items = []
self.setRowCount(0)
self.setColumnCount(0)
self.sortModes = {}
def setData(self, data):
"""Set the data displayed in the table.
Allowed formats are:
* numpy arrays
* numpy record arrays
* metaarrays
* list-of-lists [[1,2,3], [4,5,6]]
* dict-of-lists {'x': [1,2,3], 'y': [4,5,6]}
* list-of-dicts [{'x': 1, 'y': 4}, {'x': 2, 'y': 5}, ...]
"""
self.clear()
self.appendData(data)
self.resizeColumnsToContents()
@_defersort
def appendData(self, data):
"""
Add new rows to the table.
See :func:`setData() <pyqtgraph.TableWidget.setData>` for accepted
data types.
"""
startRow = self.rowCount()
fn0, header0 = self.iteratorFn(data)
if fn0 is None:
self.clear()
return
it0 = fn0(data)
try:
first = next(it0)
except StopIteration:
return
fn1, header1 = self.iteratorFn(first)
if fn1 is None:
self.clear()
return
firstVals = [x for x in fn1(first)]
self.setColumnCount(len(firstVals))
if not self.verticalHeadersSet and header0 is not None:
labels = [self.verticalHeaderItem(i).text() for i in range(self.rowCount())]
self.setRowCount(startRow + len(header0))
self.setVerticalHeaderLabels(labels + header0)
self.verticalHeadersSet = True
if not self.horizontalHeadersSet and header1 is not None:
self.setHorizontalHeaderLabels(header1)
self.horizontalHeadersSet = True
i = startRow
self.setRow(i, firstVals)
for row in it0:
i += 1
self.setRow(i, [x for x in fn1(row)])
if (
self._sorting
and self.horizontalHeadersSet
and self.horizontalHeader().sortIndicatorSection() >= self.columnCount()
):
self.sortByColumn(0, QtCore.Qt.AscendingOrder)
def setEditable(self, editable=True):
self.editable = editable
for item in self.items:
item.setEditable(editable)
def setFormat(self, format, column=None):
"""
Specify the default text formatting for the entire table, or for a
single column if *column* is specified.
If a string is specified, it is used as a format string for converting
float values (and all other types are converted using str). If a
function is specified, it will be called with the item as its only
argument and must return a string. Setting format = None causes the
default formatter to be used instead.
Added in version 0.9.9.
"""
if (
format is not None
and not isinstance(format, basestring)
and not callable(format)
):
raise ValueError(
"Format argument must string, callable, or None. (got %s)" % format
)
self._formats[column] = format
if column is None:
# update format of all items that do not have a column format
# specified
for c in range(self.columnCount()):
if self._formats.get(c, None) is None:
for r in range(self.rowCount()):
item = self.item(r, c)
if item is None:
continue
item.setFormat(format)
else:
# set all items in the column to use this format, or the default
# table format if None was specified.
if format is None:
format = self._formats[None]
for r in range(self.rowCount()):
item = self.item(r, column)
if item is None:
continue
item.setFormat(format)
def iteratorFn(self, data):
## Return 1) a function that will provide an iterator for data and 2) a list of header strings
if isinstance(data, list) or isinstance(data, tuple):
return lambda d: d.__iter__(), None
elif isinstance(data, dict):
return lambda d: iter(d.values()), list(map(asUnicode, data.keys()))
elif hasattr(data, "implements") and data.implements("MetaArray"):
if data.axisHasColumns(0):
header = [
asUnicode(data.columnName(0, i)) for i in range(data.shape[0])
]
elif data.axisHasValues(0):
header = list(map(asUnicode, data.xvals(0)))
else:
header = None
return self.iterFirstAxis, header
elif isinstance(data, np.ndarray):
return self.iterFirstAxis, None
elif isinstance(data, np.void):
return self.iterate, list(map(asUnicode, data.dtype.names))
elif data is None:
return (None, None)
elif np.isscalar(data):
return self.iterateScalar, None
else:
msg = "Don't know how to iterate over data type: {!s}".format(type(data))
raise TypeError(msg)
def iterFirstAxis(self, data):
for i in range(data.shape[0]):
yield data[i]
def iterate(self, data):
# for numpy.void, which can be iterated but mysteriously
# has no __iter__ (??)
for x in data:
yield x
def iterateScalar(self, data):
yield data
def appendRow(self, data):
self.appendData([data])
@_defersort
def addRow(self, vals):
row = self.rowCount()
self.setRowCount(row + 1)
self.setRow(row, vals)
@_defersort
def setRow(self, row, vals):
if row > self.rowCount() - 1:
self.setRowCount(row + 1)
for col in range(len(vals)):
val = vals[col]
item = self.itemClass(val, row)
item.setEditable(self.editable)
sortMode = self.sortModes.get(col, None)
if sortMode is not None:
item.setSortMode(sortMode)
format = self._formats.get(col, self._formats[None])
item.setFormat(format)
self.items.append(item)
self.setItem(row, col, item)
item.setValue(val) # Required--the text-change callback is invoked
# when we call setItem.
def setSortMode(self, column, mode):
"""
Set the mode used to sort *column*.
============== ========================================================
**Sort Modes**
value Compares item.value if available; falls back to text
comparison.
text Compares item.text()
index Compares by the order in which items were inserted.
============== ========================================================
Added in version 0.9.9
"""
for r in range(self.rowCount()):
item = self.item(r, column)
if hasattr(item, "setSortMode"):
item.setSortMode(mode)
self.sortModes[column] = mode
def sizeHint(self):
# based on http://stackoverflow.com/a/7195443/54056
width = sum(self.columnWidth(i) for i in range(self.columnCount()))
width += self.verticalHeader().sizeHint().width()
width += self.verticalScrollBar().sizeHint().width()
width += self.frameWidth() * 2
height = sum(self.rowHeight(i) for i in range(self.rowCount()))
height += self.verticalHeader().sizeHint().height()
height += self.horizontalScrollBar().sizeHint().height()
return QtCore.QSize(width, height)
def serialize(self, useSelection=False):
"""Convert entire table (or just selected area) into tab-separated text values"""
if useSelection:
selection = self.selectedRanges()[0]
rows = list(range(selection.topRow(), selection.bottomRow() + 1))
columns = list(range(selection.leftColumn(), selection.rightColumn() + 1))
else:
rows = list(range(self.rowCount()))
columns = list(range(self.columnCount()))
data = []
if self.horizontalHeadersSet:
row = []
if self.verticalHeadersSet:
row.append(asUnicode(""))
for c in columns:
row.append(asUnicode(self.horizontalHeaderItem(c).text()))
data.append(row)
for r in rows:
row = []
if self.verticalHeadersSet:
row.append(asUnicode(self.verticalHeaderItem(r).text()))
for c in columns:
item = self.item(r, c)
if item is not None:
row.append(asUnicode(item.value))
else:
row.append(asUnicode(""))
data.append(row)
s = ""
for row in data:
s += "\t".join(row) + "\n"
return s
def copySel(self):
"""Copy selected data to clipboard."""
QtGui.QApplication.clipboard().setText(self.serialize(useSelection=True))
def copyAll(self):
"""Copy all data to clipboard."""
QtGui.QApplication.clipboard().setText(self.serialize(useSelection=False))
def saveSel(self):
"""Save selected data to file."""
self.save(self.serialize(useSelection=True))
def saveAll(self):
"""Save all data to file."""
self.save(self.serialize(useSelection=False))
def save(self, data):
fileName = QtGui.QFileDialog.getSaveFileName(
self, "Save As..", "", "Tab-separated values (*.tsv)"
)
if fileName == "":
return
open(fileName, "w").write(data)
def contextMenuEvent(self, ev):
self.contextMenu.popup(ev.globalPos())
def keyPressEvent(self, ev):
if ev.key() == QtCore.Qt.Key_C and ev.modifiers() == QtCore.Qt.ControlModifier:
ev.accept()
self.copySel()
else:
QtGui.QTableWidget.keyPressEvent(self, ev)
def handleItemChanged(self, item):
item.itemChanged()
class TableWidgetItem(QtGui.QTableWidgetItem):
def __init__(self, val, index, format=None):
QtGui.QTableWidgetItem.__init__(self, "")
self._blockValueChange = False
self._format = None
self._defaultFormat = "%0.3g"
self.sortMode = "value"
self.index = index
flags = QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled
self.setFlags(flags)
self.setValue(val)
self.setFormat(format)
def setEditable(self, editable):
"""
Set whether this item is user-editable.
"""
if editable:
self.setFlags(self.flags() | QtCore.Qt.ItemIsEditable)
else:
self.setFlags(self.flags() & ~QtCore.Qt.ItemIsEditable)
def setSortMode(self, mode):
"""
Set the mode used to sort this item against others in its column.
============== ========================================================
**Sort Modes**
value Compares item.value if available; falls back to text
comparison.
text Compares item.text()
index Compares by the order in which items were inserted.
============== ========================================================
"""
modes = ("value", "text", "index", None)
if mode not in modes:
raise ValueError("Sort mode must be one of %s" % str(modes))
self.sortMode = mode
def setFormat(self, fmt):
"""Define the conversion from item value to displayed text.
If a string is specified, it is used as a format string for converting
float values (and all other types are converted using str). If a
function is specified, it will be called with the item as its only
argument and must return a string.
Added in version 0.9.9.
"""
if fmt is not None and not isinstance(fmt, basestring) and not callable(fmt):
raise ValueError(
"Format argument must string, callable, or None. (got %s)" % fmt
)
self._format = fmt
self._updateText()
def _updateText(self):
self._blockValueChange = True
try:
self._text = self.format()
self.setText(self._text)
finally:
self._blockValueChange = False
def setValue(self, value):
self.value = value
self._updateText()
def itemChanged(self):
"""Called when the data of this item has changed."""
if self.text() != self._text:
self.textChanged()
def textChanged(self):
"""Called when this item's text has changed for any reason."""
self._text = self.text()
if self._blockValueChange:
# text change was result of value or format change; do not
# propagate.
return
try:
self.value = type(self.value)(self.text())
except ValueError:
self.value = str(self.text())
def format(self):
if callable(self._format):
return self._format(self)
if isinstance(self.value, (float, np.floating)):
if self._format is None:
return self._defaultFormat % self.value
else:
return self._format % self.value
else:
return asUnicode(self.value)
def __lt__(self, other):
if self.sortMode == "index" and hasattr(other, "index"):
return self.index < other.index
if self.sortMode == "value" and hasattr(other, "value"):
return self.value < other.value
else:
return self.text() < other.text()
if __name__ == "__main__":
app = QtGui.QApplication([])
win = QtGui.QMainWindow()
t = TableWidget()
win.setCentralWidget(t)
win.resize(800, 600)
win.show()
ll = [[1, 2, 3, 4, 5]] * 20
ld = [{"x": 1, "y": 2, "z": 3}] * 20
dl = {"x": list(range(20)), "y": list(range(20)), "z": list(range(20))}
a = np.ones((20, 5))
ra = np.ones((20,), dtype=[("x", int), ("y", int), ("z", int)])
t.setData(ll)
ma = metaarray.MetaArray(
np.ones((20, 3)),
info=[
{"values": np.linspace(1, 5, 20)},
{"cols": [{"name": "x"}, {"name": "y"}, {"name": "z"}]},
],
)
t.setData(ma)