model of DCN pyramidal neuron
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from __future__ import division, absolute_import, print_function
import sys, re, inspect, textwrap, pydoc
import sphinx
import collections
from .docscrape import NumpyDocString, FunctionDoc, ClassDoc
if sys.version_info[0] >= 3:
sixu = lambda s: s
else:
sixu = lambda s: unicode(s, "unicode_escape")
class SphinxDocString(NumpyDocString):
def __init__(self, docstring, config={}):
NumpyDocString.__init__(self, docstring, config=config)
self.load_config(config)
def load_config(self, config):
self.use_plots = config.get("use_plots", False)
self.class_members_toctree = config.get("class_members_toctree", True)
# string conversion routines
def _str_header(self, name, symbol="`"):
return [".. rubric:: " + name, ""]
def _str_field_list(self, name):
return [":" + name + ":"]
def _str_indent(self, doc, indent=4):
out = []
for line in doc:
out += [" " * indent + line]
return out
def _str_signature(self):
return [""]
if self["Signature"]:
return ["``%s``" % self["Signature"]] + [""]
else:
return [""]
def _str_summary(self):
return self["Summary"] + [""]
def _str_extended_summary(self):
return self["Extended Summary"] + [""]
def _str_returns(self):
out = []
if self["Returns"]:
out += self._str_field_list("Returns")
out += [""]
for param, param_type, desc in self["Returns"]:
if param_type:
out += self._str_indent(
["**%s** : %s" % (param.strip(), param_type)]
)
else:
out += self._str_indent([param.strip()])
if desc:
out += [""]
out += self._str_indent(desc, 8)
out += [""]
return out
def _str_param_list(self, name):
out = []
if self[name]:
out += self._str_field_list(name)
out += [""]
for param, param_type, desc in self[name]:
if param_type:
out += self._str_indent(
["**%s** : %s" % (param.strip(), param_type)]
)
else:
out += self._str_indent(["**%s**" % param.strip()])
if desc:
out += [""]
out += self._str_indent(desc, 8)
out += [""]
return out
@property
def _obj(self):
if hasattr(self, "_cls"):
return self._cls
elif hasattr(self, "_f"):
return self._f
return None
def _str_member_list(self, name):
"""
Generate a member listing, autosummary:: table where possible,
and a table where not.
"""
out = []
if self[name]:
out += [".. rubric:: %s" % name, ""]
prefix = getattr(self, "_name", "")
if prefix:
prefix = "~%s." % prefix
autosum = []
others = []
for param, param_type, desc in self[name]:
param = param.strip()
# Check if the referenced member can have a docstring or not
param_obj = getattr(self._obj, param, None)
if not (
callable(param_obj)
or isinstance(param_obj, property)
or inspect.isgetsetdescriptor(param_obj)
):
param_obj = None
if param_obj and (pydoc.getdoc(param_obj) or not desc):
# Referenced object has a docstring
autosum += [" %s%s" % (prefix, param)]
else:
others.append((param, param_type, desc))
if autosum:
out += [".. autosummary::"]
if self.class_members_toctree:
out += [" :toctree:"]
out += [""] + autosum
if others:
maxlen_0 = max(3, max([len(x[0]) for x in others]))
hdr = sixu("=") * maxlen_0 + sixu(" ") + sixu("=") * 10
fmt = sixu("%%%ds %%s ") % (maxlen_0,)
out += ["", hdr]
for param, param_type, desc in others:
desc = sixu(" ").join(x.strip() for x in desc).strip()
if param_type:
desc = "(%s) %s" % (param_type, desc)
out += [fmt % (param.strip(), desc)]
out += [hdr]
out += [""]
return out
def _str_section(self, name):
out = []
if self[name]:
out += self._str_header(name)
out += [""]
content = textwrap.dedent("\n".join(self[name])).split("\n")
out += content
out += [""]
return out
def _str_see_also(self, func_role):
out = []
if self["See Also"]:
see_also = super(SphinxDocString, self)._str_see_also(func_role)
out = [".. seealso::", ""]
out += self._str_indent(see_also[2:])
return out
def _str_warnings(self):
out = []
if self["Warnings"]:
out = [".. warning::", ""]
out += self._str_indent(self["Warnings"])
return out
def _str_index(self):
idx = self["index"]
out = []
if len(idx) == 0:
return out
out += [".. index:: %s" % idx.get("default", "")]
for section, references in idx.items():
if section == "default":
continue
elif section == "refguide":
out += [" single: %s" % (", ".join(references))]
else:
out += [" %s: %s" % (section, ",".join(references))]
return out
def _str_references(self):
out = []
if self["References"]:
out += self._str_header("References")
if isinstance(self["References"], str):
self["References"] = [self["References"]]
out.extend(self["References"])
out += [""]
# Latex collects all references to a separate bibliography,
# so we need to insert links to it
if sphinx.__version__ >= "0.6":
out += [".. only:: latex", ""]
else:
out += [".. latexonly::", ""]
items = []
for line in self["References"]:
m = re.match(r".. \[([a-z0-9._-]+)\]", line, re.I)
if m:
items.append(m.group(1))
out += [" " + ", ".join(["[%s]_" % item for item in items]), ""]
return out
def _str_examples(self):
examples_str = "\n".join(self["Examples"])
if (
self.use_plots
and "import matplotlib" in examples_str
and "plot::" not in examples_str
):
out = []
out += self._str_header("Examples")
out += [".. plot::", ""]
out += self._str_indent(self["Examples"])
out += [""]
return out
else:
return self._str_section("Examples")
def __str__(self, indent=0, func_role="obj"):
out = []
out += self._str_signature()
out += self._str_index() + [""]
out += self._str_summary()
out += self._str_extended_summary()
out += self._str_param_list("Parameters")
out += self._str_returns()
for param_list in ("Other Parameters", "Raises", "Warns"):
out += self._str_param_list(param_list)
out += self._str_warnings()
out += self._str_see_also(func_role)
out += self._str_section("Notes")
out += self._str_references()
out += self._str_examples()
for param_list in ("Attributes", "Methods"):
out += self._str_member_list(param_list)
out = self._str_indent(out, indent)
return "\n".join(out)
class SphinxFunctionDoc(SphinxDocString, FunctionDoc):
def __init__(self, obj, doc=None, config={}):
self.load_config(config)
FunctionDoc.__init__(self, obj, doc=doc, config=config)
class SphinxClassDoc(SphinxDocString, ClassDoc):
def __init__(self, obj, doc=None, func_doc=None, config={}):
self.load_config(config)
ClassDoc.__init__(self, obj, doc=doc, func_doc=None, config=config)
class SphinxObjDoc(SphinxDocString):
def __init__(self, obj, doc=None, config={}):
self._f = obj
self.load_config(config)
SphinxDocString.__init__(self, doc, config=config)
def get_doc_object(obj, what=None, doc=None, config={}):
if what is None:
if inspect.isclass(obj):
what = "class"
elif inspect.ismodule(obj):
what = "module"
elif isinstance(obj, collections.Callable):
what = "function"
else:
what = "object"
if what == "class":
return SphinxClassDoc(obj, func_doc=SphinxFunctionDoc, doc=doc, config=config)
elif what in ("function", "method"):
return SphinxFunctionDoc(obj, doc=doc, config=config)
else:
if doc is None:
doc = pydoc.getdoc(obj)
return SphinxObjDoc(obj, doc, config=config)