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97 lines
2.8 KiB
97 lines
2.8 KiB
""" |
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test_simple_synapses |
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Test synapses between cell types. |
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Usage: |
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python test_synapses.py <pre_celltype> <post_celltype> |
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Supported cell types: sgc, bushy, tstellate, dstellate, tuberculoventral, pyramidal |
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""" |
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import sys |
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import pyqtgraph as pg |
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from cnmodel.protocols.simple_synapse_test import SimpleSynapseTest |
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from cnmodel import cells |
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from cnmodel.synapses import Synapse |
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def runtest(): |
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if len(sys.argv) < 3: |
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print("Usage: python test_synapses.py <pre_celltype> <post_celltype>") |
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print( |
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" Supported cell types: sgc, bushy, tstellate, dstellate, tuberculoventral, pyramidal" |
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) |
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sys.exit(1) |
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convergence = { |
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"sgc": { |
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"bushy": 1, |
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"tstellate": 6, |
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"dstellate": 10, |
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"dstellate_eager": 10, |
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"tuberculoventral": 6, |
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"pyramidal": 5, |
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}, |
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"dstellate": { |
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"bushy": 10, |
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"tstellate": 15, |
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"dstellate": 5, |
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"tuberculoventral": 10, |
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"pyramidal": 10, |
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}, |
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"tuberculoventral": { |
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"bushy": 6, |
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"tstellate": 3, |
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"dstellate": 0, |
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"tuberculoventral": 2, |
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"pyramidal": 10, |
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}, |
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} |
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c = [] |
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for cellType in sys.argv[1:3]: |
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if cellType == "sgc": |
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cell = cells.SGC.create() |
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elif cellType == "tstellate": |
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cell = cells.TStellate.create(debug=True, ttx=False) |
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elif ( |
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cellType == "dstellate" |
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): # Type I-II Rothman model, similiar excitability (Xie/Manis, unpublished) |
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cell = cells.DStellate.create(model="RM03", debug=True, ttx=False) |
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elif cellType == "dstellate_eager": # From Eager et al. |
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cell = cells.DStellate.create(model="Eager", debug=True, ttx=False) |
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elif cellType == "bushy": |
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cell = cells.Bushy.create(debug=True, ttx=True) |
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elif cellType == "tuberculoventral": |
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cell = cells.Tuberculoventral.create(debug=True, ttx=False) |
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elif cellType == "pyramidal": |
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cell = cells.Pyramidal.create(debug=True, ttx=False) |
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else: |
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raise ValueError("Unknown cell type '%s'" % cellType) |
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c.append(cell) |
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preCell, postCell = c |
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nTerminals = convergence.get(sys.argv[1], {}).get(sys.argv[2], None) |
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if nTerminals is None: |
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nTerminals = 1 |
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print( |
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"Warning: Unknown convergence for %s => %s, assuming %d" |
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% (sys.argv[1], sys.argv[2], nTerminals) |
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) |
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if sys.argv[1:3] == ["sgc", "bushy"]: |
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niter = 1 |
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else: |
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niter = 20 |
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st = SimpleSynapseTest() |
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st.run(preCell.soma, postCell.soma, iterations=niter) |
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st.show() |
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return st # keep in memory |
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if __name__ == "__main__": |
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r = runtest() |
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print("runtest done") |
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if sys.flags.interactive == 0: |
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pg.QtGui.QApplication.exec_()
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